A cooperative feature gene extraction algorithm that combines classification and clustering

In feature gene selection, filtering model concerns classification accuracy while ignoring gene redundancy problem. On the other hand, gene clustering finds correlated genes without considering their predictive abilities. It is valuable to enhance their performances by the help of each other. We report a new feature gene extraction algorithm, namely Double-thresholding Extraction of Feature Gene (DEFG), that combines gene filtering and gene clustering. It firstly pre-select feature gene set from the original dataset. A modified gene clustering is then applied to refine this set. In the gene clustering, specific designs are employed to balance the predictive abilities and the redundancies of the extracted feature gene. We have tested DEFG on a microarray dataset and compared its performance with that of two benchmark algorithms. The experimental results show that DEFG is superior to them in terms of internal validation accuracy and external validation accuracy. Also, DEFG can generalize the pattern structure by a small number of training samples. ©2009 IEEE.published_or_final_versio

Solution-Processable Carbon Nanoelectrodes for Single-Molecule Investigations

We gratefully acknowledge financial support from the Engineering and Physical Sciences Research Council under Award EP/M029506/1

H-alpha +[NII] Observations of the HII Regions in M81

In a first of a series of studies of the H-alpha + [NII] emission from nearby spiral galaxies, we present measurements of H-alpha + [NII] emission from HII regions in M81. Our method uses large-field-CCD images and long-slit spectra, and is part of the ongoing Beijing-Arizona-Taipei-Connecticut Sky Survey. The CCD images are taken with the NAOC 0.6/0.9m f/3 Schmidt telescope at the Xinglong Observing Station, using a multicolor filter set. Spectra of 10 of the brightest HII regions are obtained using the NAOC 2.16m telescope with a Tek 1024 X 1024 CCD. The continua of the spectra are calibrated by flux-calibrated images taken from the Schmidt observations. We determine the continuum component of our H-alpha + [NII] image via interpolation from the more accurately-measured backgrounds (M81 starlight) obtained from the two neighboring (in wavelength) BATC filter images. We use the calibrated fluxes of H-alpha + [NII] emission from the spectra to normalize this interpolated, continuum-subtracted H-alpha + [NII] image. We estimate the zero point uncertainty of the measured H-alpha + [NII] emission flux to be $\sim$ 8%. A catalogue of H-alpha + [NII] fluxes for 456 HII regions is provided, with those fluxes are on a more consistent linear scale than previously available. The logarithmically-binned H-alpha + [NII] luminosity function of HII regions is found to have slope $\alpha$ = -0.70, consistent with previous results (which allowed $\alpha=-0.5 \sim -0.8$). From the overall H-alpha + [NII] luminosity of the HII regions, the star formation rate of M81 is found to be $\sim 0.68 M_{\odot} {\rm yr}^{-1}$, modulo uncertainty with extinction corrections.Comment: 18 pages, 7 figures, accepted for publication in the Astronomical Journa

AACVD Grown WO3 Nanoneedles Decorated with Ag/Ag2O Nanoparticles for Oxygen Measurement in a Humid Environment

A sensitive material consisting of silver/silver oxide decorated WO3 was successfully grown in two steps via aerosol-assisted chemical vapour deposition (AACVD). Morphological, structural, and composition analysis revealed our method is effective for growing WO3 nanoneedles decorated with silver/silver oxide nanoparticles at relatively low temperature (≤375°C) onto sensor arrays printed on alumina substrate. The sensors were tested for oxygen under humid environment (relative humidity ~85%) with the concentration ranging between 0% and 20%. Gas sensing results showed good response to oxygen with optimum temperature was observed at 400°C for undecorated WO3 and at 350°C for silver/silver oxide decorated WO3. The addition of silver/silver oxide was found to improve the sensor response by almost 300%, making the sensor a potential alternative to replace existing Pb-based oxygen sensor

Quenching and reactivation of electroluminescence by charge trapping and detrapping in Si-implanted silicon nitride thin film

In this brief, quenching of electroluminescence (EL) from Si-implanted silicon nitride (SNR) thin film under a forward bias has been observed. The quenching phenomenon is shown to be due to charge trapping in the defect states involved in the radiative recombination. The composite EL bands have different quenching rates, causing a change in the EL spectrum shape by the EL quenching. Release of the trapped charges by a low-temperature annealing at 120 °C or an application of a reverse gate bias can partially recover the quenched EL both in the intensity and spectrum shape. The quenching phenomenon poses a serious challenge to the application of Si-implanted SNR thin films in light-emitting devices. © 2009 IEEE.published_or_final_versio

Evolution of electroluminescence from multiple Si-implanted silicon nitride films with thermal annealing

Influence of thermal annealing on electroluminescence (EL) from multiple-Si-implanted silicon nitride films has been investigated. A reduced injection current and an enhanced EL intensity have been obtained simultaneously by increasing the annealing temperature, which results in a higher EL quantum efficiency. In addition, four emission bands are identified, and their peak energies, intensities, and full widths at half maxima are found to change with annealing temperature. A model is proposed to illustrate the carrier transport, the mechanisms of the four emission bands, and the evolution of the EL bands with annealing as well. The two major bands and the minor ultraviolet band are explained in terms of the recombination of the injected electrons in either the silicon dangling-bond (≡ Si 0) states or the nitride conduction band with the injected holes in either the band tail states above the nitride valence band or the valence band itself, while the minor near infrared band is attributed to the Si nanocrystals formed in the thin film. © 2009 American Institute of Physics.published_or_final_versio

Three geographically separate domestications of Asian rice

Domesticated rice (Oryza sativa L.) accompanied the dawn of Asian civilization(1) and has become one of world's staple crops. From archaeological and genetic evidence various contradictory scenarios for the origin of different varieties of cultivated rice have been proposed, the most recent based on a single domestication(2,3). By examining the footprints of selection in the genomes of different cultivated rice types, we show that there were three independent domestications in different parts of Asia. We identify wild populations in southern China and the Yangtze valley as the source of the japonica gene pool, and populations in Indochina and the Brahmaputra valley as the source of the indica gene pool. We reveal a hitherto unrecognized origin for the aus variety in central India or Bangladesh. We also conclude that aromatic rice is a result of a hybridization between japonica and aus, and that the tropical and temperate versions of japonica are later adaptations of one crop. Our conclusions are in accord with archaeological evidence that suggests widespread origins of rice cultivation(1,4). We therefore anticipate that our results will stimulate a more productive collaboration between genetic and archaeological studies of rice domestication, and guide utilization of genetic resources in breeding programmes aimed at crop improvement.European Research Council [339941]info:eu-repo/semantics/publishedVersio

Performance Analysis of Dual-Hop MIMO AF Relaying Network with Multiple Interferences

In this paper, we investigate the performance of a dual-hop multiple-input-multiple-output (MIMO) amplify-and-forward (AF) relay network, where the source, relay, and destination are all equipped with multiple antennas. By using maximum ratio transmission (MRT) at the transmitter and maximum ratio combining (MRC) at the receiver, we first obtain the output signal-to-interference-plus-noise ratio (SINR) of the dual-hop AF relay system, considering multiple cochannel interferences (CCIs), as well as noise at the relay. Then, we derive an exact closed-form expression for the outage probability (OP), and the asymptotic result of OP at high SNR, which can be used to calculate the array gain and diversity order. Finally, computer simulations are conducted to validate the performance analysis. Our new analytical expressions not only provide a fast and efficient method to evaluate the system performance but enable us to gain valuable insights into the effects of key parameters on the MIMO AF relaying network performance that benefits from implementing multiple antennas at each of the three nodes as well

Rapid Assembly of Multiple-Exon cDNA Directly from Genomic DNA

Backgrouud. Polymerase chain reaction (PCR) is extensively applied in gene cloning. But due to the existence of introns, low copy number of particular genes and high complexity of the eukaryotic genome, it is usually impossible to amplify and clone a gene as a full-length sequence directly from the genome by ordinary PCR based techniques. Cloning of cDNA instead of genomic DNA involves multiple steps: harvest of tissues that express the gene of interest, RNA isolation, cDNA synthesis (reverse transcription), and PCR amplification. To simplify the cloning procedures and avoid the problems caused by ubiquitously distributed durable RNases, we have developed a novel strategy allowing the cloning of any cDNA or open reading frame (ORF) with wild type sequence in any spliced form from a single genomic DNA preparation. Methodology. Our Genomic DNA Splicing technique contains the following steps: first, all exons of the gene are amplified from a genomic DNA preparation, using software-optimized, highly efficient primers residing in flanking introns. Next, the tissue-specific exon sequences are assembled into one full-length sequence by overlapping PCR with deliberately designed primers located at the splicing sites. Finally, software-optimized outmost primers are exploited for efficient amplification of the assembled full-length products. Conclusions. The Genomic DNA Splicing protocol avoids RNA preparation and reverse transcription steps, and the entire assembly process can be finished within hours, Since genamic DNA is more stable than RNA, it may be a more practical cloning strategy for many genes, especially the ones that are very large and difficult to generate a full length cDNA using oligo-dT primed reverse transcription. With this technique, we successfully doned the full-length wild type coding sequence of human polymeric immunoglobulin receptor, which is 2295 bp in length and composed of 10 exons. © 2007 An et al.published_or_final_versio

Designing ultrafine lamellar eutectic structure in bimodal titanium alloys by semi-solid sintering

We report on a novel approach to design typical ultrafine lamellar eutectic structure in bimodal alloys fabricated by semi-solid sintering (SSS) of a eutectic mixture. In our work ultrafine lamellar eutectic structure was implemented by controlling the phase composition of eutectic reaction and consequently by regulating the structure of eutectic reaction-induced liquid phase through varying component number. Microstructure analysis indicate that although all SSSed alloys have the same three phase constitutions of bcc beta-Ti(Fe Co) and fcc Ti-2(Co Fe) the morphology and distribution of the eutectic structure transforms from limited length and minor quantity to partial fine alternating bcc beta-Ti and bcc Ti(Fe Co) lamellae and further to typical complete ultrafine alternating continuous lamellae in the SSSed ternary Ti-Fe-Co quaternary Ti-Fe-Co-Nb and quinary Ti-Fe-Co-Nb-Al alloys. Interestingly the SSSed Ti-Fe-Co-Nb-Al alloy presents a novel bimodal microstructure of coarse fcc Ti-2(Co Fe) surrounded by an ultrafine lamellar eutectic matrix containing ultrafine bcc beta-Ti and bcc Ti(Fe Co) lamellae. This bimodal microstructure exhibits ultra-high yield strength of 2050 MPa with plasticity in compression of 19.7% which exceed published values of equivalent materials. Our results provide a novel pathway for fabricating new-structure metallic alloys for high-performance structural applications. (C) 2017 Elsevier B.V. All rights reserved.</p